Proteins Analysis

We took proteins to obtain a pdb AlphaFold model:

>gi|9632629|ref|NP_049863.1| gp37 long tail fiber

AF: N terminal 1 - 551 region

_images/2%402_T4nterm_551.png

PDB DB: 2xgf 811 - 1026

_images/2xgf_pdb.png

SIB: https://swissmodel.expasy.org/repository/uniprot/P03744

https://www.rcsb.org/structure/2XGF

>gi|138016|sp|P08232|VG37_BPOX2 Long tail fiber protein p37 (Protein Gp37) (Receptor recognizing protein)

AF: Complete sequence:

_images/8%408_P08232trimer.png

From 134-247 region

SIB: https://swissmodel.expasy.org/repository/uniprot/P08232?csm=197D4BE750F7EDB0

AF C terminal 1-251 Region:

_images/8%408_P08232trimercterminal.png

AF superimposed to Swiss Model:

1-247 Region

_images/P08232_AF_SW.png

https://github.com/DraLaylaHirsh/MotifHXH/blob/8c65c15f733b29ff56ca734dfec281b63a5a3a85/docs/trimerdata/allP08232.cif

>gi|138017|sp|P07067|VG37_BPT2 Long tail fiber protein p37 (Protein Gp37) (Receptor recognizing protein)

477-649 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/P07067?template=4uxg.1.A&range=477-649

967-1046 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/P07067?template=4uxg.1.A&range=967-1046

1237-1340 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/P07067?template=7dc3.1.C&range=1237-1340

>gi|138020|sp|P07876|VG38_BPK3 Receptor recognizing protein (Protein Gp38)

AF: 2-260 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/P07876?csm=3B7E612BC62300C3

_images/1%401_P07876trimer.png

>gi|138023|sp|P07875|VG38_BPT2 Receptor recognizing protein (Protein Gp38)

2-262 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/P07875?csm=0567366918F6C745

AF 1 - 262 Region:

_images/2%402_P07875.png

>gi|20140797|sp|Q9G0B5|VG37_BPAR1 Long tail fiber protein p37 (Protein Gp37) (Receptor recognizing protein)

AF: C terminal 680 - 1244 region

_images/5%405_Q9G0B5cterm_565.png

>gi|3915245|sp|Q38394|VG37_BPK3 Long tail fiber protein p37 (Protein Gp37) (Receptor recognizing protein)

463 - 644 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/Q38394?template=4uxg.1.A&range=463-644

921-1004 region

SIB: https://swissmodel.expasy.org/repository/uniprot/Q38394?template=4uxg.1.A&range=921-1004

1139 - 1242 Region

SIB: https://swissmodel.expasy.org/repository/uniprot/Q38394?template=7dc3.1.C&range=1139-1242

Using Swiss Model together

_images/SurfaceQ38394SWiss.png

_images/CartoonQ38394SWiss.png

AF: N terminal 1 - 559 region

_images/4%404_Q38394nterm_559.png

AF superimposed to Swiss Model:

1 - 644 Region

_images/Q38394_AF_SW.png

https://github.com/DraLaylaHirsh/MotifHXH/blob/5d9d565e103aed390f9287112bb21b3ef680872f/docs/trimerdata/Q38394.cif

>gi|93662|pir||S13237 tail fiber protein gp37 - phage TuIa (fragment)

444 - 627 region

SIB: https://swissmodel.expasy.org/repository/uniprot/G1FHG9?template=4uxg.1.A&range=444-627

909-987 region

SIB: https://swissmodel.expasy.org/repository/uniprot/G1FHG9?template=4uxg.1.A&range=909-987

AF 1- 382 Region:

_images/4%404_S13237trimer.png